SegmentEditorEffect.py
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import json
import logging
import os
import shutil
import tempfile
import time
from collections import OrderedDict
import numpy as np
import SimpleITK as sitk
import qt
import sitkUtils
import slicer
import vtk
from SegmentEditorEffects import *
# from NvidiaAIAAClientAPI.client_api import AIAAClient, AIAAException, AIAAError, urlparse
from NvidiaAIAAClientAPI.client_api2 import AIAAClient, AIAAException, AIAAError, urlparse
class SegmentEditorEffect(AbstractScriptedSegmentEditorEffect):
"""This effect uses NVIDIA AIAA algorithm for segmentation the input volume"""
def __init__(self, scriptedEffect):
scriptedEffect.name = 'SDAML MedAI'
# this effect operates on all segments at once (not on a single selected segment)
scriptedEffect.perSegment = False
# this effect can create its own segments, so we do not require any pre-existing segment
if (slicer.app.majorVersion >= 5) or (slicer.app.majorVersion >= 4 and slicer.app.minorVersion >= 11):
scriptedEffect.requireSegments = False
AbstractScriptedSegmentEditorEffect.__init__(self, scriptedEffect)
self.models = OrderedDict()
# Effect-specific members
self.annotationFiducialNode = None
self.annotationFiducialNodeObservers = []
self.dgPositiveFiducialNode = None
self.dgPositiveFiducialNodeObservers = []
self.dgNegativeFiducialNode = None
self.dgNegativeFiducialNodeObservers = []
self.ignoreFiducialNodeAddEvent = False
self.seedFiducialsNodeSelector = None
self.isActivated = False
self.progressBar = None
self.logic = None
self.observedParameterSetNode = None
self.parameterSetNodeObserverTags = []
self.observedSegmentation = None
self.segmentationNodeObserverTags = []
def __del__(self):
AbstractScriptedSegmentEditorEffect.__del__(self)
if self.progressBar:
self.progressBar.close()
def clone(self):
# It should not be necessary to modify this method
import qSlicerSegmentationsEditorEffectsPythonQt as effects
clonedEffect = effects.qSlicerSegmentEditorScriptedEffect(None)
clonedEffect.setPythonSource(__file__.replace('\\', '/'))
return clonedEffect
def icon(self, name='SegmentEditorEffect.png'):
# It should not be necessary to modify this method
iconPath = os.path.join(os.path.dirname(__file__), name)
if os.path.exists(iconPath):
return qt.QIcon(iconPath)
return qt.QIcon()
def helpText(self):
return """Система для автоматической сегментации опухолей головного мозга (ЛАПДиМО НГУ).
Модуль требует доступа к серверу ЛАПДиМО НГУ.
Подробности смотрите в программной <a href="https://bigdata.nsu.ru:7445/medical/Slicer_plugin/tree/master/server">документации</a>."""
# return """NVIDIA AI-Assisted Annotation for automatic and boundary points based segmentation.
#The module requires access to an NVidia Clara AIAA server.
#See <a href="https://github.com/NVIDIA/ai-assisted-annotation-client/tree/master/slicer-plugin">
#module documentation</a> for more information."""
def serverUrl(self):
serverUrl = self.ui.serverComboBox.currentText
if not serverUrl:
# Default Slicer AIAA server
serverUrl = "http://perklabseg.asuscomm.com:5000"
return serverUrl
def setupOptionsFrame(self):
if slicer.app.majorVersion == 4 and slicer.app.minorVersion <= 10:
self.scriptedEffect.addOptionsWidget(qt.QLabel("This effect only works in "
"recent 3D Slicer Preview Release (Slicer-4.11.x)."))
return
# Load widget from .ui file. This .ui file can be edited using Qt Designer
# (Edit / Application Settings / Developer / Qt Designer -> launch).
uiWidget = slicer.util.loadUI(os.path.join(os.path.dirname(__file__), "SegmentEditorNvidiaAIAA.ui"))
self.scriptedEffect.addOptionsWidget(uiWidget)
self.ui = slicer.util.childWidgetVariables(uiWidget)
# Set icons and tune widget properties
self.ui.serverComboBox.lineEdit().setPlaceholderText("enter server address or leave empty to use default")
self.ui.fetchModelsButton.setIcon(self.icon('refresh-icon.png'))
self.ui.segmentationButton.setIcon(self.icon('nvidia-icon.png'))
self.ui.annotationModelFilterPushButton.setIcon(self.icon('filter-icon.png'))
self.ui.annotationButton.setIcon(self.icon('nvidia-icon.png'))
self.ui.annotationFiducialEditButton.setIcon(self.icon('edit-icon.png'))
self.ui.annotationFiducialPlacementWidget.setMRMLScene(slicer.mrmlScene)
self.ui.annotationFiducialPlacementWidget.buttonsVisible = False
self.ui.annotationFiducialPlacementWidget.placeButton().show()
self.ui.annotationFiducialPlacementWidget.deleteButton().show()
self.ui.dgPositiveFiducialPlacementWidget.setMRMLScene(slicer.mrmlScene)
self.ui.dgPositiveFiducialPlacementWidget.placeButton().toolTip = "Select +ve points"
self.ui.dgPositiveFiducialPlacementWidget.buttonsVisible = False
self.ui.dgPositiveFiducialPlacementWidget.placeButton().show()
self.ui.dgPositiveFiducialPlacementWidget.deleteButton().show()
self.ui.dgNegativeFiducialPlacementWidget.setMRMLScene(slicer.mrmlScene)
self.ui.dgNegativeFiducialPlacementWidget.placeButton().toolTip = "Select -ve points"
self.ui.dgNegativeFiducialPlacementWidget.buttonsVisible = False
self.ui.dgNegativeFiducialPlacementWidget.placeButton().show()
self.ui.dgNegativeFiducialPlacementWidget.deleteButton().show()
# Connections
self.ui.fetchModelsButton.connect('clicked(bool)', self.onClickFetchModels)
self.ui.serverComboBox.connect('currentIndexChanged(int)', self.onClickFetchModels)
# self.ui.t1VolumeSelector.connect('currentIndexChanged(int)', self.onClickFetchModels)
# self.ui.segmentationModelSelector.connect("currentIndexChanged(int)", self.updateMRMLFromGUI)
self.ui.segmentationButton.connect('clicked(bool)', self.onClickSegmentation)
self.ui.annotationModelSelector.connect("currentIndexChanged(int)", self.updateMRMLFromGUI)
self.ui.annotationModelFilterPushButton.connect('toggled(bool)', self.updateMRMLFromGUI)
self.ui.annotationFiducialEditButton.connect('clicked(bool)', self.onClickEditAnnotationFiducialPoints)
self.ui.annotationButton.connect('clicked(bool)', self.onClickAnnotation)
self.ui.deepgrowModelSelector.connect("currentIndexChanged(int)", self.updateMRMLFromGUI)
# TODO добавлено
self.setMasterVolumes()
self.setCLientID()
def setMasterVolumes(self):
self.setMasterVolumesInSelector(self.ui.t1VolumeSelector)
self.setMasterVolumesInSelector(self.ui.t1cVolumeSelector)
self.setMasterVolumesInSelector(self.ui.t2FlairVolumeSelector)
self.setMasterVolumesInSelector(self.ui.t2VolumeSelector)
def setMasterVolumesInSelector(self, selector):
volumeNodes = slicer.mrmlScene.GetNodesByClass('vtkMRMLScalarVolumeNode')
for el in volumeNodes:
name = el.GetName()
idx = selector.findText(name)
if idx == -1:
print("Add ", name)
selector.addItem(name)
def setCLientID(self):
client_id = self.getClientIdFromPath()
self.ui.ClientIdLabel.setText(client_id)
def getClientIdFromPath(self):
dir = slicer.mrmlScene.GetRootDirectory()
arr = dir.split("/")
name = arr[len(arr) - 2].split("_")[0]
return name
def currentSegment(self):
pnode = self.scriptedEffect.parameterSetNode()
segmentationNode = pnode.GetSegmentationNode()
segmentation = segmentationNode.GetSegmentation() if segmentationNode else None
if not pnode or not segmentation or not pnode.GetSelectedSegmentID():
return None
return segmentation.GetSegment(pnode.GetSelectedSegmentID())
def currentSegmentID(self):
pnode = self.scriptedEffect.parameterSetNode()
return pnode.GetSelectedSegmentID() if pnode else None
def updateServerSettings(self):
self.logic.setServer(self.serverUrl())
self.logic.setUseCompression(slicer.util.settingsValue(
"NVIDIA-AIAA/compressData",
True, converter=slicer.util.toBool))
self.logic.setUseSession(slicer.util.settingsValue(
"NVIDIA-AIAA/aiaaSession",
False, converter=slicer.util.toBool))
self.saveServerUrl()
def saveServerUrl(self):
self.updateMRMLFromGUI()
# Save selected server URL
settings = qt.QSettings()
serverUrl = self.ui.serverComboBox.currentText
settings.setValue("NVIDIA-AIAA/serverUrl", serverUrl)
# Save current server URL to the top of history
serverUrlHistory = settings.value("NVIDIA-AIAA/serverUrlHistory")
if serverUrlHistory:
serverUrlHistory = serverUrlHistory.split(";")
else:
serverUrlHistory = []
try:
serverUrlHistory.remove(serverUrl)
except ValueError:
pass
serverUrlHistory.insert(0, serverUrl)
serverUrlHistory = serverUrlHistory[:10] # keep up to first 10 elements
settings.setValue("NVIDIA-AIAA/serverUrlHistory", ";".join(serverUrlHistory))
self.updateServerUrlGUIFromSettings()
def onClickFetchModels(self):
self.fetchAIAAModels(showInfo=False)
def fetchAIAAModels(self, showInfo=False):
if not self.logic:
return
self.setMasterVolumes()
self.setCLientID()
start = time.time()
try:
self.updateServerSettings()
models = self.logic.list_models()
except:
slicer.util.errorDisplay("Failed to fetch models from remote server. "
"Make sure server address is correct and <server_uri>/v1/models "
"is accessible in browser",
detailedText=traceback.format_exc())
return
self.models.clear()
model_count = {}
for model in models:
model_name = model['name']
model_type = model['type']
model_count[model_type] = model_count.get(model_type, 0) + 1
logging.debug('{} = {}'.format(model_name, model_type))
self.models[model_name] = model
self.updateGUIFromMRML()
msg = ''
msg += '-----------------------------------------------------\t\n'
msg += 'Total Models Available: \t' + str(len(models)) + '\t\n'
msg += '-----------------------------------------------------\t\n'
for model_type in model_count.keys():
msg += model_type.capitalize() + ' Models: \t' + str(model_count[model_type]) + '\t\n'
msg += '-----------------------------------------------------\t\n'
if showInfo:
qt.QMessageBox.information(slicer.util.mainWindow(), 'NVIDIA AIAA', msg)
logging.debug(msg)
logging.info("Time consumed by fetchAIAAModels: {0:3.1f}".format(time.time() - start))
def updateSegmentationMask(self, extreme_points, in_file, modelInfo, overwriteCurrentSegment=False,
sliceIndex=None, cropBox=None):
start = time.time()
logging.debug('Update Segmentation Mask from: {}'.format(in_file))
if in_file is None or os.path.exists(in_file) is False:
return False
segmentationNode = self.scriptedEffect.parameterSetNode().GetSegmentationNode()
segmentation = segmentationNode.GetSegmentation()
currentSegment = self.currentSegment()
labelImage = sitk.ReadImage(in_file)
labelmapVolumeNode = sitkUtils.PushVolumeToSlicer(labelImage, None, className='vtkMRMLLabelMapVolumeNode')
if cropBox:
labelmapArray = slicer.util.arrayFromVolume(labelmapVolumeNode)
new_array = np.zeros_like(labelmapArray)
# because numpy is in KJI
# https://www.slicer.org/wiki/Documentation/Nightly/ScriptRepository#Get_centroid_of_a_segment_in_world_.28RAS.29_coordinates
box_slice = tuple([slice(x[0], x[1]) for x in cropBox][::-1])
currentLabelmapArray = slicer.util.arrayFromSegmentBinaryLabelmap(segmentationNode,
self.currentSegmentID())
currentLabelmap = slicer.vtkOrientedImageData()
segmentationNode.GetBinaryLabelmapRepresentation(self.currentSegmentID(), currentLabelmap)
segImageExtent = currentLabelmap.GetExtent()
if np.sum(currentLabelmapArray) != 0:
extent_slice = tuple(
[slice(segImageExtent[i], segImageExtent[i + 1] + 1) for i in range(0, 5, 2)][::-1])
new_array[extent_slice] = currentLabelmapArray
new_array[box_slice] = labelmapArray[box_slice]
slicer.util.updateVolumeFromArray(labelmapVolumeNode, new_array)
numberOfExistingSegments = segmentation.GetNumberOfSegments()
slicer.modules.segmentations.logic().ImportLabelmapToSegmentationNode(labelmapVolumeNode, segmentationNode)
slicer.mrmlScene.RemoveNode(labelmapVolumeNode)
modelLabels = [] if modelInfo is None else modelInfo['labels']
numberOfAddedSegments = segmentation.GetNumberOfSegments() - numberOfExistingSegments
logging.debug('Adding {} segments'.format(numberOfAddedSegments))
addedSegmentIds = [segmentation.GetNthSegmentID(numberOfExistingSegments + i)
for i in range(numberOfAddedSegments)]
colors = {
"Necr": (0.5, 174.0/256, 0.5),
"EnTu": (1.0, 0.0, 0.0),
"NenTu": (241.0/256, 241.0/256, 145.0/256),
"Ed": (1.0, 1.0, 0.0)
}
for i, segmentId in enumerate(addedSegmentIds):
segment = segmentation.GetSegment(segmentId)
if i == 0 and overwriteCurrentSegment and currentSegment:
logging.debug('Update current segment with id: {} => {}'.format(segmentId, segment.GetName()))
# Copy labelmap representation to the current segment then remove the imported segment
labelmap = slicer.vtkOrientedImageData()
segmentationNode.GetBinaryLabelmapRepresentation(segmentId, labelmap)
if sliceIndex:
# Just update segment label map on that specific slice
selectedSegmentLabelmap = self.scriptedEffect.selectedSegmentLabelmap()
dims = selectedSegmentLabelmap.GetDimensions()
count = 0
for x in range(dims[0]):
for y in range(dims[1]):
v = selectedSegmentLabelmap.GetScalarComponentAsDouble(x, y, sliceIndex, 0)
if v:
count = count + 1
selectedSegmentLabelmap.SetScalarComponentFromDouble(x, y, sliceIndex, 0, 0)
logging.debug('Total Non Zero: {}'.format(count))
# Clear the Slice
if count:
self.scriptedEffect.modifySelectedSegmentByLabelmap(
selectedSegmentLabelmap,
slicer.qSlicerSegmentEditorAbstractEffect.ModificationModeSet)
# Union label map
self.scriptedEffect.modifySelectedSegmentByLabelmap(
labelmap,
slicer.qSlicerSegmentEditorAbstractEffect.ModificationModeAdd)
else:
self.scriptedEffect.modifySelectedSegmentByLabelmap(
labelmap,
slicer.qSlicerSegmentEditorAbstractEffect.ModificationModeSet)
segmentationNode.RemoveSegment(segmentId)
else:
logging.debug('Setting new segmentation with id: {} => {}'.format(segmentId, segment.GetName()))
if i < len(modelLabels):
label_name = modelLabels[i]
segment.SetName(label_name)
if label_name in colors:
segment.SetColor(*colors[label_name])
else:
# we did not get enough labels (for example annotation_mri_prostate_cg_and_pz model
# returns a labelmap with
# 2 labels but in the model info only 1 label is provided)
segment.SetName("unknown {}".format(i))
# Save extreme points into first segment
if extreme_points:
logging.debug('Extreme Points: {}'.format(extreme_points))
if overwriteCurrentSegment and currentSegment:
segment = currentSegment
else:
segment = segmentation.GetNthSegment(numberOfExistingSegments)
if segment:
segment.SetTag("AIAA.DExtr3DExtremePoints", json.dumps(extreme_points))
os.unlink(in_file)
logging.info("Time consumed by updateSegmentationMask: {0:3.1f}".format(time.time() - start))
return True
def setProgressBarLabelText(self, label):
if not self.progressBar:
self.progressBar = slicer.util.createProgressDialog(windowTitle="Wait...", maximum=100)
self.progressBar.labelText = label
def reportProgress(self, progressPercentage):
if not self.progressBar:
self.progressBar = slicer.util.createProgressDialog(windowTitle="Wait...", maximum=100)
self.progressBar.show()
self.progressBar.activateWindow()
self.progressBar.setValue(progressPercentage)
slicer.app.processEvents()
def getPermissionForImageDataUpload(self):
return slicer.util.confirmOkCancelDisplay(
"Master volume - without any additional patient information -"
" will be sent to remote data processing server: {0}.\n\n"
"Click 'OK' to proceed with the segmentation.\n"
"Click 'Cancel' to not upload any data and cancel segmentation.\n".format(self.serverUrl()),
dontShowAgainSettingsKey="NVIDIA-AIAA/showImageDataSendWarning")
def closeAiaaSession(self):
inputVolume = self.scriptedEffect.parameterSetNode().GetMasterVolumeNode()
self.logic.closeSession(inputVolume)
# TODO добавлено
def getChosenMasterVolumes(self):
first = self.ui.t1VolumeSelector.currentText
second = self.ui.t1cVolumeSelector.currentText
third = self.ui.t2FlairVolumeSelector.currentText
fourth = self.ui.t2VolumeSelector.currentText
volumeNodes = slicer.mrmlScene.GetNodesByClass('vtkMRMLScalarVolumeNode')
inputVolumes = dict()
logger = logging.getLogger(__name__)
for el in volumeNodes:
logger.info('Preparing for Inference Action')
if el.GetName() == first:
inputVolumes["t1"] = el
if el.GetName() == second:
inputVolumes["t1c"] = el
if el.GetName() == third:
inputVolumes["t2flair"] = el
if el.GetName() == fourth:
inputVolumes["t2"] = el
slicer.app.processEvents()
return inputVolumes
def createAiaaSessionIfNotExists(self):
operationDescription = 'Please wait while uploading the volume to AIAA Server'
logging.debug(operationDescription)
self.updateServerSettings()
# inputVolume = self.scriptedEffect.parameterSetNode().GetMasterVolumeNode()
inputVolumes = self.getChosenMasterVolumes()
in_files, session_id = self.logic.getSession(inputVolumes)
if in_files or session_id:
return in_files, session_id
if not self.getPermissionForImageDataUpload():
return None, None
try:
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
self.setProgressBarLabelText(operationDescription)
slicer.app.processEvents()
# TODO теперь стал массив надо подавать везде массив
in_files, session_id = self.logic.createSession(inputVolumes)
qt.QApplication.restoreOverrideCursor()
self.progressBar.hide()
except:
qt.QApplication.restoreOverrideCursor()
self.progressBar.hide()
slicer.util.errorDisplay(operationDescription + " - unexpected error.", detailedText=traceback.format_exc())
return None, None
return in_files, session_id
# def testing(self):
# volumeNodes = slicer.mrmlScene.GetNodesByClass('vtkMRMLScalarVolumeNode')
# masterVolumeNames = []
# for el in volumeNodes:
# masterVolumeNames.append(el.GetName())
# return masterVolumeNames
def onClickSegmentation(self):
in_files, session_id = self.createAiaaSessionIfNotExists()
if in_files is None and session_id is None:
return
start = time.time()
model = self.ui.segmentationModelSelector.currentText
modelInfo = self.models[model]
operationDescription = 'Upload data. Model: {}'.format(model)
logging.debug(operationDescription)
self.setProgressBarLabelText(operationDescription)
slicer.app.processEvents()
result = 'FAILED'
client_id = self.getClientIdFromPath()
try:
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
extreme_points, result_file = self.logic.segmentation(in_files, session_id, model, client_id)
image = sitk.ReadImage(result_file)
image_arr = sitk.GetArrayFromImage(image)
uniqs = []
n_class = 4
for i in range(1, n_class + 1):
uniq_val = np.array(np.where(image_arr == i)).shape[1]
uniqs.append(uniq_val)
et = (uniqs[1] / 4) ** (1 / 3)
tc = ((uniqs[0] + uniqs[1] + uniqs[2]) / 4) ** (1 / 3)
wt = (np.sum(uniqs) / 4) ** (1 / 3)
total_time = int(time.time() - start)
info_str = 'Total time: {}s.\nCase: {},\nET: {:.6f} mm^3,\nTC: {:.6f} mm^3,\nWT: {:.6f} mm^3\n'.format(total_time, client_id, et, tc, wt)
print(info_str)
slicer.util.infoDisplay(info_str, 'Total time: {}s. Case: {}'.format(total_time, client_id))
if self.updateSegmentationMask(extreme_points, result_file, modelInfo):
result = 'SUCCESS'
self.updateGUIFromMRML()
self.onClickEditAnnotationFiducialPoints()
except AIAAException as ae:
logging.exception("AIAA Exception")
if ae.error == AIAAError.SESSION_EXPIRED:
self.closeAiaaSession()
slicer.util.warningDisplay(operationDescription + " - session expired. Retry Again!")
else:
slicer.util.errorDisplay(operationDescription + " - " + ae.msg, detailedText=traceback.format_exc())
except:
logging.exception("Unknown Exception")
slicer.util.errorDisplay(operationDescription + " - unexpected error.", detailedText=traceback.format_exc())
finally:
qt.QApplication.restoreOverrideCursor()
self.progressBar.hide()
msg = 'Run segmentation for ({0}): {1}\t\n' \
'Time Consumed: {2:3.1f} (sec)'.format(model, result, (time.time() - start))
logging.info(msg)
self.setCLientID()
def getFiducialPointsXYZ(self, fiducialNode):
v = self.scriptedEffect.parameterSetNode().GetMasterVolumeNode()
RasToIjkMatrix = vtk.vtkMatrix4x4()
v.GetRASToIJKMatrix(RasToIjkMatrix)
point_set = []
n = fiducialNode.GetNumberOfFiducials()
for i in range(n):
coord = [0.0, 0.0, 0.0]
fiducialNode.GetNthFiducialPosition(i, coord)
world = [0, 0, 0, 0]
fiducialNode.GetNthFiducialWorldCoordinates(i, world)
p_Ras = [coord[0], coord[1], coord[2], 1.0]
p_Ijk = RasToIjkMatrix.MultiplyDoublePoint(p_Ras)
p_Ijk = [round(i) for i in p_Ijk]
logging.debug('RAS: {}; WORLD: {}; IJK: '.format(coord, world, p_Ijk))
point_set.append(p_Ijk[0:3])
logging.info('Current Fiducials-Points: {}'.format(point_set))
return point_set
def getFiducialPointXYZ(self, fiducialNode, index):
v = self.scriptedEffect.parameterSetNode().GetMasterVolumeNode()
RasToIjkMatrix = vtk.vtkMatrix4x4()
v.GetRASToIJKMatrix(RasToIjkMatrix)
coord = [0.0, 0.0, 0.0]
fiducialNode.GetNthFiducialPosition(index, coord)
world = [0, 0, 0, 0]
fiducialNode.GetNthFiducialWorldCoordinates(index, world)
p_Ras = [coord[0], coord[1], coord[2], 1.0]
p_Ijk = RasToIjkMatrix.MultiplyDoublePoint(p_Ras)
p_Ijk = [round(i) for i in p_Ijk]
logging.debug('RAS: {}; WORLD: {}; IJK: '.format(coord, world, p_Ijk))
return p_Ijk[0:3]
# TODO ну и че тут делать
def onClickAnnotation(self):
# TODO теперь тут возвращается массив
in_file, session_id = self.createAiaaSessionIfNotExists()
if in_file is None and session_id is None:
return
start = time.time()
model = self.ui.annotationModelSelector.currentText
label = self.currentSegment().GetName()
operationDescription = 'Run Annotation for model: {} for segment: {}'.format(model, label)
logging.debug(operationDescription)
result = 'FAILED'
try:
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
pointSet = self.getFiducialPointsXYZ(self.annotationFiducialNode)
result_file = self.logic.dextr3d(in_file, session_id, model, pointSet)
if self.updateSegmentationMask(pointSet, result_file, None, overwriteCurrentSegment=True):
result = 'SUCCESS'
self.updateGUIFromMRML()
except AIAAException as ae:
logging.exception("AIAA Exception")
if ae.error == AIAAError.SESSION_EXPIRED:
self.closeAiaaSession()
slicer.util.warningDisplay(operationDescription + " - session expired. Retry Again!")
else:
logging.exception("Unknown Exception")
slicer.util.errorDisplay(operationDescription + " - " + ae.msg, detailedText=traceback.format_exc())
except:
slicer.util.errorDisplay(operationDescription + " - unexpected error.", detailedText=traceback.format_exc())
finally:
qt.QApplication.restoreOverrideCursor()
msg = 'Run annotation for ({0}): {1}\t\n' \
'Time Consumed: {2:3.1f} (sec)'.format(model, result, (time.time() - start))
logging.info(msg)
def onClickDeepgrow(self, current_point):
model = self.ui.deepgrowModelSelector.currentText
if not model:
slicer.util.warningDisplay("Please select a deepgrow model")
return
segment = self.currentSegment()
if not segment:
slicer.util.warningDisplay("Please add/select a segment to run deepgrow")
return
foreground_all = self.getFiducialPointsXYZ(self.dgPositiveFiducialNode)
background_all = self.getFiducialPointsXYZ(self.dgNegativeFiducialNode)
segment.SetTag("AIAA.ForegroundPoints", json.dumps(foreground_all))
segment.SetTag("AIAA.BackgroundPoints", json.dumps(background_all))
# TODO и тут??
in_file, session_id = self.createAiaaSessionIfNotExists()
if in_file is None and session_id is None:
return
# use model info "deepgrow" to determine
deepgrow_type = self.models[model].get("deepgrow")
deepgrow_type = deepgrow_type.lower() if deepgrow_type else ""
deepgrow_3d = True if '3d' in deepgrow_type else False
start = time.time()
label = self.currentSegment().GetName()
operationDescription = 'Run Deepgrow for segment: {}; model: {}; 3d {}'.format(label, model, deepgrow_3d)
logging.debug(operationDescription)
result = 'FAILED'
try:
qt.QApplication.setOverrideCursor(qt.Qt.WaitCursor)
sliceIndex = current_point[2]
logging.debug('Slice Index: {}'.format(sliceIndex))
spatial_size = self.ui.deepgrowSpatialSize.text
spatial_size = json.loads(spatial_size) if spatial_size else None
if deepgrow_3d:
foreground = foreground_all
background = background_all
else:
foreground = [x for x in foreground_all if x[2] == sliceIndex]
background = [x for x in background_all if x[2] == sliceIndex]
logging.debug('Foreground: {}'.format(foreground))
logging.debug('Background: {}'.format(background))
logging.debug('Current point: {}'.format(current_point))
logging.debug('Spatial size: {}'.format(spatial_size))
result_file, params = self.logic.deepgrow(
in_file, session_id, model, foreground, background, [current_point], spatial_size)
logging.debug('Params from deepgrow is {}'.format(params))
if deepgrow_3d and self.updateSegmentationMask(
extreme_points=None,
in_file=result_file,
modelInfo=None,
overwriteCurrentSegment=True,
cropBox=params.get('crop')
):
result = 'SUCCESS'
self.updateGUIFromMRML()
elif not deepgrow_3d and self.updateSegmentationMask(
extreme_points=None,
in_file=result_file,
modelInfo=None,
overwriteCurrentSegment=True,
sliceIndex=sliceIndex):
result = 'SUCCESS'
self.updateGUIFromMRML()
except AIAAException as ae:
logging.exception("AIAA Exception")
if ae.error == AIAAError.SESSION_EXPIRED:
self.closeAiaaSession()
slicer.util.warningDisplay(operationDescription + " - session expired. Retry Again!")
else:
slicer.util.errorDisplay(operationDescription + " - " + ae.msg, detailedText=traceback.format_exc())
except:
logging.exception("Unknown Exception")
slicer.util.errorDisplay(operationDescription + " - unexpected error.", detailedText=traceback.format_exc())
finally:
qt.QApplication.restoreOverrideCursor()
msg = 'Run deepgrow for ({0}): {1}\t\n' \
'Time Consumed: {2:3.1f} (sec)'.format(label, result, (time.time() - start))
logging.info(msg)
def onClickEditAnnotationFiducialPoints(self):
self.onEditFiducialPoints(self.annotationFiducialNode, "AIAA.DExtr3DExtremePoints")
def onEditFiducialPoints(self, fiducialNode, tagName):
segment = self.currentSegment()
segmentId = self.currentSegmentID()
logging.debug('Current SegmentID: {}; Segment: {}'.format(segmentId, segment))
if fiducialNode:
fiducialNode.RemoveAllMarkups()
if segment and segmentId:
v = self.scriptedEffect.parameterSetNode().GetMasterVolumeNode()
IjkToRasMatrix = vtk.vtkMatrix4x4()
v.GetIJKToRASMatrix(IjkToRasMatrix)
fPosStr = vtk.mutable("")
segment.GetTag(tagName, fPosStr)
pointset = str(fPosStr)
logging.debug('{} => {} Fiducial points are: {}'.format(segmentId, segment.GetName(), pointset))
if fPosStr is not None and len(pointset) > 0:
points = json.loads(pointset)
for p in points:
p_Ijk = [p[0], p[1], p[2], 1.0]
p_Ras = IjkToRasMatrix.MultiplyDoublePoint(p_Ijk)
logging.debug('Add Fiducial: {} => {}'.format(p_Ijk, p_Ras))
fiducialNode.AddFiducialFromArray(p_Ras[0:3])
self.updateGUIFromMRML()
def reset(self):
self.resetFiducial(self.ui.annotationFiducialPlacementWidget,
self.annotationFiducialNode,
self.annotationFiducialNodeObservers)
self.annotationFiducialNode = None
self.resetFiducial(self.ui.dgPositiveFiducialPlacementWidget,
self.dgPositiveFiducialNode,
self.dgPositiveFiducialNodeObservers)
self.dgPositiveFiducialNode = None
self.resetFiducial(self.ui.dgNegativeFiducialPlacementWidget,
self.dgNegativeFiducialNode,
self.dgNegativeFiducialNodeObservers)
self.dgNegativeFiducialNode = None
def resetFiducial(self, fiducialWidget, fiducialNode, fiducialNodeObservers):
if fiducialWidget.placeModeEnabled:
fiducialWidget.setPlaceModeEnabled(False)
if fiducialNode:
slicer.mrmlScene.RemoveNode(fiducialNode)
self.removeFiducialNodeObservers(fiducialNode, fiducialNodeObservers)
def activate(self):
logging.debug('NVidia AIAA effect activated')
if not self.logic:
self.logic = AIAALogic()
self.logic.setProgressCallback(
progress_callback=lambda progressPercentage: self.reportProgress(progressPercentage))
self.isActivated = True
self.scriptedEffect.showEffectCursorInSliceView = False
self.updateServerUrlGUIFromSettings()
# Create empty markup fiducial node
if not self.annotationFiducialNode:
self.annotationFiducialNode, self.annotationFiducialNodeObservers = self.createFiducialNode(
'A',
self.onAnnotationFiducialNodeModified,
[1, 0.5, 0.5])
self.ui.annotationFiducialPlacementWidget.setCurrentNode(self.annotationFiducialNode)
self.ui.annotationFiducialPlacementWidget.setPlaceModeEnabled(False)
# Create empty markup fiducial node for deep grow +ve and -ve
if not self.dgPositiveFiducialNode:
self.dgPositiveFiducialNode, self.dgPositiveFiducialNodeObservers = self.createFiducialNode(
'P',
self.onDeepGrowFiducialNodeModified,
[0.5, 1, 0.5])
self.ui.dgPositiveFiducialPlacementWidget.setCurrentNode(self.dgPositiveFiducialNode)
self.ui.dgPositiveFiducialPlacementWidget.setPlaceModeEnabled(False)
if not self.dgNegativeFiducialNode:
self.dgNegativeFiducialNode, self.dgNegativeFiducialNodeObservers = self.createFiducialNode(
'N',
self.onDeepGrowFiducialNodeModified,
[0.5, 0.5, 1])
self.ui.dgNegativeFiducialPlacementWidget.setCurrentNode(self.dgNegativeFiducialNode)
self.ui.dgNegativeFiducialPlacementWidget.setPlaceModeEnabled(False)
self.updateGUIFromMRML()
self.saveServerUrl()
self.fetchAIAAModels()
self.observeParameterNode(True)
self.observeSegmentation(True)
def deactivate(self):
logging.debug('NVidia AIAA effect deactivated')
self.isActivated = False
self.observeSegmentation(False)
self.observeParameterNode(False)
self.reset()
# TODO:: Call this on Exit event
# self.logic.closeAllSessions()
def createCursor(self, widget):
# Turn off effect-specific cursor for this effect
return slicer.util.mainWindow().cursor
def setMRMLDefaults(self):
self.scriptedEffect.setParameterDefault("ModelFilterLabel", "")
self.scriptedEffect.setParameterDefault("SegmentationModel", "")
self.scriptedEffect.setParameterDefault("AnnotationModel", "")
self.scriptedEffect.setParameterDefault("AnnotationModelFiltered", 0)
def observeParameterNode(self, observationEnabled):
parameterSetNode = self.scriptedEffect.parameterSetNode()
if observationEnabled and self.observedParameterSetNode == parameterSetNode:
return
if not observationEnabled and not self.observedSegmentation:
return
# Need to update the observer
# Remove old observer
if self.observedParameterSetNode:
for tag in self.parameterSetNodeObserverTags:
self.observedParameterSetNode.RemoveObserver(tag)
self.parameterSetNodeObserverTags = []
self.observedParameterSetNode = None
# Add new observer
if observationEnabled and parameterSetNode is not None:
self.observedParameterSetNode = parameterSetNode
observedEvents = [
vtk.vtkCommand.ModifiedEvent
]
for eventId in observedEvents:
self.parameterSetNodeObserverTags.append(
self.observedParameterSetNode.AddObserver(eventId, self.onParameterSetNodeModified))
def observeSegmentation(self, observationEnabled):
segmentationNode = self.scriptedEffect.parameterSetNode().GetSegmentationNode()
segmentation = segmentationNode.GetSegmentation() if segmentationNode else None
if observationEnabled and self.observedSegmentation == segmentation:
return
if not observationEnabled and not self.observedSegmentation:
return
# Need to update the observer
# Remove old observer
if self.observedSegmentation:
for tag in self.segmentationNodeObserverTags:
self.observedSegmentation.RemoveObserver(tag)
self.segmentationNodeObserverTags = []
self.observedSegmentation = None
# Add new observer
if observationEnabled and segmentation is not None:
self.observedSegmentation = segmentation
observedEvents = [
slicer.vtkSegmentation.SegmentModified
]
for eventId in observedEvents:
self.segmentationNodeObserverTags.append(
self.observedSegmentation.AddObserver(eventId, self.onSegmentationModified))
def onParameterSetNodeModified(self, caller, event):
logging.debug("Parameter Node Modified: {}".format(event))
if self.isActivated:
self.fetchAIAAModels()
self.ignoreFiducialNodeAddEvent = True
self.onEditFiducialPoints(self.annotationFiducialNode, "AIAA.DExtr3DExtremePoints")
self.onEditFiducialPoints(self.dgPositiveFiducialNode, "AIAA.ForegroundPoints")
self.onEditFiducialPoints(self.dgNegativeFiducialNode, "AIAA.BackgroundPoints")
self.ignoreFiducialNodeAddEvent = False
else:
self.updateGUIFromMRML()
def onSegmentationModified(self, caller, event):
logging.debug("Segmentation Modified: {}".format(event))
self.updateGUIFromMRML()
def updateServerUrlGUIFromSettings(self):
# Save current server URL to the top of history
settings = qt.QSettings()
serverUrlHistory = settings.value("NVIDIA-AIAA/serverUrlHistory")
wasBlocked = self.ui.serverComboBox.blockSignals(True)
self.ui.serverComboBox.clear()
if serverUrlHistory:
self.ui.serverComboBox.addItems(serverUrlHistory.split(";"))
self.ui.serverComboBox.setCurrentText(settings.value("NVIDIA-AIAA/serverUrl"))
self.ui.serverComboBox.blockSignals(wasBlocked)
def updateSelector(self, selector, model_types, param, filtered, defaultIndex=0):
wasSelectorBlocked = selector.blockSignals(True)
selector.clear()
currentSegment = self.currentSegment()
currentSegmentName = currentSegment.GetName().lower() if currentSegment else ""
for model_name, model in self.models.items():
if model['type'] in model_types:
if filtered and not (currentSegmentName in model_name.lower()):
continue
selector.addItem(model_name)
selector.setItemData(selector.count - 1, model['description'], qt.Qt.ToolTipRole)
model = self.scriptedEffect.parameter(param) if self.scriptedEffect.parameterDefined(param) else ""
if not model and currentSegment:
model = vtk.mutable("")
currentSegment.GetTag(param, model)
modelIndex = selector.findText(model)
modelIndex = defaultIndex if modelIndex < 0 < selector.count else modelIndex
selector.setCurrentIndex(modelIndex)
try:
modelInfo = self.models[model]
selector.setToolTip(modelInfo["description"])
except:
selector.setToolTip("")
selector.blockSignals(wasSelectorBlocked)
def updateGUIFromMRML(self):
annotationModelFiltered = self.scriptedEffect.integerParameter("AnnotationModelFiltered") != 0
wasBlocked = self.ui.annotationModelFilterPushButton.blockSignals(True)
self.ui.annotationModelFilterPushButton.checked = annotationModelFiltered
self.ui.annotationModelFilterPushButton.blockSignals(wasBlocked)
self.updateSelector(self.ui.segmentationModelSelector,
{'segmentation', 'others', 'pipeline'},
'SegmentationModel', False, 0)
self.updateSelector(self.ui.annotationModelSelector,
{'annotation'},
'AIAA.AnnotationModel',
annotationModelFiltered, -1)
self.updateSelector(self.ui.deepgrowModelSelector,
{'deepgrow', 'pipeline'},
'DeepgrowModel', False, 0)
# Enable/Disable
self.ui.segmentationButton.setEnabled(self.ui.segmentationModelSelector.currentText)
currentSegment = self.currentSegment()
if currentSegment:
self.ui.dgPositiveFiducialPlacementWidget.setEnabled(self.ui.deepgrowModelSelector.currentText)
self.ui.dgNegativeFiducialPlacementWidget.setEnabled(self.ui.deepgrowModelSelector.currentText)
if currentSegment and self.annotationFiducialNode and self.ui.annotationModelSelector.currentText:
numberOfDefinedPoints = self.annotationFiducialNode.GetNumberOfDefinedControlPoints()
if numberOfDefinedPoints >= 6:
self.ui.annotationButton.setEnabled(True)
self.ui.annotationButton.setToolTip("Segment the object based on specified boundary points")
else:
self.ui.annotationButton.setEnabled(False)
self.ui.annotationButton.setToolTip(
"Not enough points. Place at least 6 points near the boundaries of the object (one or more on each side).")
else:
self.ui.annotationButton.setEnabled(False)
self.ui.annotationButton.setToolTip("Select a segment from the segment list and place boundary points.")
def updateMRMLFromGUI(self):
wasModified = self.scriptedEffect.parameterSetNode().StartModify()
segmentationModelIndex = self.ui.segmentationModelSelector.currentIndex
if segmentationModelIndex >= 0:
# Only overwrite segmentation model in MRML node if there is a valid selection
# (to not clear the model if it is temporarily not available)
segmentationModel = self.ui.segmentationModelSelector.itemText(segmentationModelIndex)
self.scriptedEffect.setParameter("SegmentationModel", segmentationModel)
deepgrowModelIndex = self.ui.deepgrowModelSelector.currentIndex
if deepgrowModelIndex >= 0:
deepgrowModel = self.ui.deepgrowModelSelector.itemText(deepgrowModelIndex)
self.scriptedEffect.setParameter("DeepgrowModel", deepgrowModel)
annotationModelIndex = self.ui.annotationModelSelector.currentIndex
if annotationModelIndex >= 0:
# Only overwrite annotation model in MRML node if there is a valid selection
# (to not clear the model if it is temporarily not available)
annotationModel = self.ui.annotationModelSelector.itemText(annotationModelIndex)
currentSegment = self.currentSegment()
if currentSegment:
currentSegment.SetTag("AIAA.AnnotationModel", annotationModel)
self.scriptedEffect.setParameter("AnnotationModelFiltered",
1 if self.ui.annotationModelFilterPushButton.checked else 0)
self.scriptedEffect.parameterSetNode().EndModify(wasModified)
@staticmethod
def createFiducialNode(name, onMarkupNodeModified, color):
displayNode = slicer.mrmlScene.AddNewNodeByClass("vtkMRMLMarkupsDisplayNode")
displayNode.SetTextScale(0)
displayNode.SetSelectedColor(color)
fiducialNode = slicer.mrmlScene.AddNewNodeByClass("vtkMRMLMarkupsFiducialNode")
fiducialNode.SetName(name)
fiducialNode.SetAndObserveDisplayNodeID(displayNode.GetID())
fiducialNodeObservers = []
SegmentEditorEffect.addFiducialNodeObserver(fiducialNode, onMarkupNodeModified)
return fiducialNode, fiducialNodeObservers
@staticmethod
def removeFiducialNodeObservers(fiducialNode, fiducialNodeObservers):
if fiducialNode and fiducialNodeObservers:
for observer in fiducialNodeObservers:
fiducialNode.RemoveObserver(observer)
@staticmethod
def addFiducialNodeObserver(fiducialNode, onMarkupNodeModified):
fiducialNodeObservers = []
if fiducialNode:
eventIds = [slicer.vtkMRMLMarkupsNode.PointPositionDefinedEvent]
for eventId in eventIds:
fiducialNodeObservers.append(fiducialNode.AddObserver(eventId, onMarkupNodeModified))
return fiducialNodeObservers
def onAnnotationFiducialNodeModified(self, observer, eventid):
self.updateGUIFromMRML()
def onDeepGrowFiducialNodeModified(self, observer, eventid):
self.updateGUIFromMRML()
logging.debug('Deepgrow Point Event!!')
if self.ignoreFiducialNodeAddEvent:
return
markupsNode = observer
movingMarkupIndex = markupsNode.GetDisplayNode().GetActiveControlPoint()
logging.debug("Markup point added; point ID = {}".format(movingMarkupIndex))
current_point = self.getFiducialPointXYZ(markupsNode, movingMarkupIndex)
logging.debug("Current Point: {}".format(current_point))
self.onClickDeepgrow(current_point)
self.ignoreFiducialNodeAddEvent = True
self.onEditFiducialPoints(self.dgPositiveFiducialNode, "AIAA.ForegroundPoints")
self.onEditFiducialPoints(self.dgNegativeFiducialNode, "AIAA.BackgroundPoints")
self.ignoreFiducialNodeAddEvent = False
def updateModelFromSegmentMarkupNode(self):
self.updateGUIFromMRML()
def interactionNodeModified(self, interactionNode):
self.updateGUIFromMRML()
class AIAALogic:
def __init__(self, server_url=None, progress_callback=None):
self.aiaa_tmpdir = slicer.util.tempDirectory('slicer-aiaa')
self.volumeToAiaaSessions = dict()
self.progress_callback = progress_callback
self.server_url = server_url
self.useCompression = True
self.useSession = False
def __del__(self):
shutil.rmtree(self.aiaa_tmpdir, ignore_errors=True)
def inputFileExtension(self):
return ".nii.gz" if self.useCompression else ".nii"
def outputFileExtension(self):
return ".nii.gz"
def setServer(self, server_url=None):
if not server_url:
server_url = "http://skull.cs.queensu.ca:8123"
self.server_url = server_url
def setUseCompression(self, useCompression):
self.useCompression = useCompression
def setUseSession(self, useSession):
self.useSession = useSession
def setProgressCallback(self, progress_callback=None):
self.progress_callback = progress_callback
def reportProgress(self, progress):
if self.progress_callback:
self.progress_callback(progress)
# TODO изменено
def getSession(self, inputVolumes):
t = self.volumeToAiaaSessions.get(self.nodeCacheKey(inputVolumes.values()))
if t:
in_files = []
in_files.append(t[0])
session_id = t[1]
server_url = t[2]
if len(t) > 3:
for item in t[3:]:
in_files.append(item)
if not self.useSession:
return in_files, session_id
parsed_uri1 = urlparse(server_url)
result1 = '{uri.scheme}://{uri.netloc}/'.format(uri=parsed_uri1)
parsed_uri2 = urlparse(self.server_url)
result2 = '{uri.scheme}://{uri.netloc}/'.format(uri=parsed_uri2)
logging.debug("Compare URL-1: {} v/s URL-2: {}".format(result1, result2))
if result1 == result2 and session_id:
logging.debug('Session already exists; session-id: {}'.format(session_id))
return in_files, session_id
logging.info('Close Mismatched Session; url {} => {}'.format(result1, result2))
self.closeSession(inputVolumes)
return None, None
def closeSession(self, inputVolumes):
t = self.volumeToAiaaSessions.get(self.nodeCacheKey(inputVolumes.values()))
if t:
session_id = t[1]
server_url = t[2]
if self.useSession:
aiaaClient = AIAAClient(server_url)
aiaaClient.close_session(session_id)
self.volumeToAiaaSessions.pop(self.nodeCacheKey(inputVolumes.values()))
# TODO изменено
def createSession(self, inputVolumes):
t = self.volumeToAiaaSessions.get(self.nodeCacheKey(inputVolumes.values()))
in_files = []
start = time.time()
if t is None or t[0] is None or t[3] is None or t[4] is None:
self.reportProgress(5)
for el in inputVolumes:
in_file = tempfile.NamedTemporaryFile(prefix=el + "_", suffix=self.inputFileExtension(), dir=self.aiaa_tmpdir).name
slicer.util.saveNode(inputVolumes[el], in_file)
in_files.append(in_file)
slicer.app.processEvents()
logging.info('Saved Input Nodes into {0} in {1:3.1f}s'.format(in_files[0], time.time() - start))
else:
in_files.append(t[0])
if len(t) > 3:
for item in t[3:]:
in_files.append(item)
self.reportProgress(30)
session_id = None
if self.useSession:
aiaaClient = AIAAClient(self.server_url)
# TODO теперь стал массив
response = aiaaClient.create_session(in_files[0])
logging.info('AIAA Session Response Json: {}'.format(response))
session_id = response.get('session_id')
logging.info('Created AIAA session ({0}) in {1:3.1f}s'.format(session_id, time.time() - start))
self.volumeToAiaaSessions[self.nodeCacheKey(inputVolumes.values())] = (in_files[0], session_id, self.server_url, *in_files[1:])
self.reportProgress(100)
return in_files, session_id
def closeAllSessions(self):
for k in self.volumeToAiaaSessions.keys():
t = self.volumeToAiaaSessions[k]
in_file = t[0]
session_id = t[1]
server_url = t[2]
if self.useSession:
aiaaClient = AIAAClient(server_url)
aiaaClient.close_session(session_id)
if os.path.exists(in_file):
os.unlink(in_file)
self.volumeToAiaaSessions.clear()
def list_models(self, label=None):
logging.debug('Fetching List of Models for label: {}'.format(label))
aiaaClient = AIAAClient(self.server_url)
return aiaaClient.model_list(label)
# TODO изменено
def nodeCacheKey(self, mrmlNodes):
key = ""
for item in mrmlNodes:
key += item.GetID() + "*"
if list(mrmlNodes):
key += str(list(mrmlNodes)[0].GetMTime())
else: key += "_empty_0000"
# TODO изменено
def segmentation(self, images_in, session_id, model, client_id):
logging.debug('Preparing input data for segmentation')
self.reportProgress(0)
result_file = tempfile.NamedTemporaryFile(prefix="autosegmentation_", suffix=self.outputFileExtension(), dir=self.aiaa_tmpdir).name
aiaaClient = AIAAClient(self.server_url)
aiaaClient.inference(
params={"client_id": client_id, "net": model},
images_in=images_in,
image_out=result_file,
session_id=session_id,
client_id=client_id,
reportProgress=self.reportProgress
)
# extreme_points = params.get('points', params.get('extreme_points'))
# logging.debug('Extreme Points: {}'.format(extreme_points))
self.reportProgress(100)
return dict(), result_file
def dextr3d(self, image_in, session_id, model, pointset):
logging.debug('Preparing for Annotation/Dextr3D Action')
result_file = tempfile.NamedTemporaryFile(suffix=self.outputFileExtension(), dir=self.aiaa_tmpdir).name
aiaaClient = AIAAClient(self.server_url)
aiaaClient.dextr3d(
model=model,
point_set=pointset,
image_in=image_in,
image_out=result_file,
pre_process=(not self.useSession),
session_id=session_id,
)
return result_file
def deepgrow(self, image_in, session_id, model, foreground_point_set, background_point_set, current_point,
spatial_size):
logging.debug('Preparing for Deepgrow Action (model: {})'.format(model))
result_file = tempfile.NamedTemporaryFile(suffix=self.outputFileExtension(), dir=self.aiaa_tmpdir).name
aiaaClient = AIAAClient(self.server_url)
in_params = {
'foreground': foreground_point_set,
'background': background_point_set,
'current_point': current_point,
}
if spatial_size and len(spatial_size):
in_params['spatial_size'] = spatial_size
params = aiaaClient.inference(
model=model,
params=in_params,
image_in=image_in,
image_out=result_file,
session_id=session_id,
)
return result_file, params