NvidiaDeepgrowSegTool2D.h
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/*
* Copyright (c) 2019, NVIDIA CORPORATION. All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions
* are met:
* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
* * Neither the name of NVIDIA CORPORATION nor the names of its
* contributors may be used to endorse or promote products derived
* from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS ``AS IS'' AND ANY
* EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
* PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
* CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
* EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
* PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
* PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
* OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
* OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
#ifndef NvidiaDeepgrowSegTool2D_h
#define NvidiaDeepgrowSegTool2D_h
#include <MitkNvidiaAIAAModuleExports.h>
#include <mitkAutoSegmentationTool.h>
#include <mitkCommon.h>
#include <mitkDataStorage.h>
#include <mitkPointSet.h>
#include <mitkPointSetDataInteractor.h>
#include <itkImage.h>
#include <nvidia/aiaa/model.h>
#include <nvidia/aiaa/pointset.h>
namespace us {
class ModuleResource;
}
class MITKNVIDIAAIAAMODULE_EXPORT NvidiaDeepgrowSegTool2D : public mitk::AutoSegmentationTool
{
public:
mitkClassMacro(NvidiaDeepgrowSegTool2D, AutoSegmentationTool);
itkFactorylessNewMacro(Self);
us::ModuleResource GetIconResource() const override;
bool CanHandle(const mitk::BaseData* referenceData, const mitk::BaseData* workingData) const override;
const char* GetName() const override;
const char** GetXPM() const override;
void Activated() override;
void Deactivated() override;
virtual mitk::DataNode::Pointer GetPointSetNode();
mitk::DataNode* GetReferenceData();
mitk::DataNode* GetWorkingData();
mitk::DataStorage* GetDataStorage();
void SetServerURI(const std::string &serverURI, const int serverTimeout);
void GetModelInfo(std::map<std::string, std::string>& deepgrow);
void PointAdded(mitk::DataNode::Pointer imageNode, bool background);
void ClearPoints();
void RunDeepGrow(const std::string &model, mitk::DataNode::Pointer imageNode);
protected:
NvidiaDeepgrowSegTool2D();
~NvidiaDeepgrowSegTool2D() override;
template <typename TPixel, unsigned int VImageDimension>
void ItkImageProcessRunDeepgrow(itk::Image<TPixel, VImageDimension> *itkImage, std::string imageNodeId);
template <typename TPixel, unsigned int VImageDimension>
void DisplayResult(const std::string &tmpResultFileName, const int sliceIndex);
int GetCurrentSlice(const nvidia::aiaa::PointSet &points);
nvidia::aiaa::PointSet GetPointsForCurrentSlice(const nvidia::aiaa::PointSet &points, int sliceIndex);
private:
mitk::PointSet::Pointer m_PointSet;
mitk::PointSetDataInteractor::Pointer m_pointInteractor;
mitk::DataNode::Pointer m_PointSetNode;
std::map<std::string, std::string> m_AIAASessions;
nvidia::aiaa::PointSet m_foregroundPoints;
nvidia::aiaa::PointSet m_backgroundPoints;
std::string m_AIAAServerUri;
int m_AIAAServerTimeout;
nvidia::aiaa::ModelList m_AIAAModelList;
std::string m_AIAACurrentModelName;
};
#endif